BLASTP 2.2.5 [Nov-16-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ci0100134314
(87 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
1,798,171 sequences; 593,787,773 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38085445|ref|XP_357681.1| similar to Mucin 2 precursor (... 52 3e-06
gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabid... 46 2e-04
gi|8567350|ref|NP_059496.1| enamelin [Mus musculus] >gi|113... 45 4e-04
gi|37540594|ref|XP_293801.3| similar to CG32656-PA [Homo sa... 45 4e-04
gi|34932493|ref|XP_344708.1| similar to alpha 1 type XVII c... 44 0.001
>gi|38085445|ref|XP_357681.1| similar to Mucin 2 precursor (Intestinal mucin 2) [Mus musculus]
Length = 1046
Score = 51.6 bits (122), Expect = 3e-06
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 1 PISRTHTVGPHPYLRSHTVGPXPISRSHTVGPHPYLMSHTVGPHPYLGPTPT--SPISRS 58
P R TV + + TV P R+ TV HP + TV HP T + +P+ R+
Sbjct: 163 PQYRNTTVQEYHNTGTPTVQEYPQYRNTTVQEHPQCRNTTVQEHPQYRNTHSTGTPLHRN 222
Query: 59 N------TVEPHPYLRSNTVEPHPYLRSNTVGPHP 87
TV+ HP R+NTV+ HP R+ TV HP
Sbjct: 223 THSAGTPTVQEHPQYRNNTVQEHPQCRNTTVQEHP 257
Score = 49.3 bits (116), Expect = 2e-05
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 5 THTVGPHPYLRSHTVGPXPISRSHTVGPHP-YLMSHTVGP----HPYLGPTPT---SPIS 56
T TV +P R+ TV P R+ TV HP Y +H+ G + + TPT P
Sbjct: 178 TPTVQEYPQYRNTTVQEHPQCRNTTVQEHPQYRNTHSTGTPLHRNTHSAGTPTVQEHPQY 237
Query: 57 RSNTVEPHPYLRSNTVEPHPYLRS 80
R+NTV+ HP R+ TV+ HP R+
Sbjct: 238 RNNTVQEHPQCRNTTVQEHPQYRN 261
Score = 48.1 bits (113), Expect = 4e-05
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 5 THTVGPHPYLRSHTVGPXPISRSHTVGPHP-YLMSHTVGPHPYLGPT---------PT-- 52
T TV HP R+ TV + + TV HP Y +H+ G Y T PT
Sbjct: 805 TPTVQEHPQYRNTTVQEHHNTGTPTVQEHPQYRNTHSAGTPQYRNTTVQEHHSTGTPTVQ 864
Query: 53 -SPISRSNTVEPHPYLRSNTVEPHPYLRSNTVGPHP 87
P R+ TV+ HP R+ T + HP R+ T HP
Sbjct: 865 EHPQYRNTTVQEHPQCRNTTTQEHPQYRNTTTQEHP 900
>gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabidopsis thaliana]
Length = 1480
Score = 45.8 bits (107), Expect = 2e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 8 VGPHPYLRSHTVGPXPISRSHTVGPHPYLMSHTVGPHPYLGPTPTSPISRSN-TVEPHPY 66
V PHP+ + T+ P P R HP+ TV PHP+ P PT P +PHP+
Sbjct: 52 VKPHPHPKPPTIKPPPPKR------HPHPKPPTVKPHPHPKP-PTKPHPHPKPPTKPHPH 104
Query: 67 LRSNTVEPHPYLRSNTVGPHP 87
+ T++P P+ + PHP
Sbjct: 105 PKPPTIKPPPHPKPR---PHP 122
>gi|8567350|ref|NP_059496.1| enamelin [Mus musculus]
gi|11386729|sp|O55196|ENAM_MOUSE Enamelin precursor
gi|7513640|pir||T37193 enamelin matrix protein - mouse
gi|2737961|gb|AAB94312.1| enamelin [Mus musculus]
gi|14423062|gb|AAK62271.1| enamelin [Mus musculus]
Length = 1274
Score = 44.7 bits (104), Expect = 4e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 1 PISRTHTVGPHPYLRSHTVGPXPISRSHTVGPHP-----YLMSHTVGPHPYLGPTPTS-- 53
P S +G +P ++G P + ++G +P ++ ++ P++G P+S
Sbjct: 469 PASNKPFIGANPAANKPSIGTNPAANKPSIGTNPAANKPFVRNNVGANKPFVGTNPSSNQ 528
Query: 54 PISRSNTVEPHPYLRSNTVEPHPYLRSN--TVGP 85
P RSN P++RSN P++ +N +VGP
Sbjct: 529 PFLRSNQASNKPFMRSNQASNKPFVGTNVASVGP 562
>gi|37540594|ref|XP_293801.3| similar to CG32656-PA [Homo sapiens]
Length = 439
Score = 44.7 bits (104), Expect = 4e-04
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 1 PISRTHTVGPHPYLRSHTVGPXPISRSHTVGPHPYLMSHTVGPHP--YLGPTPTSPISRS 58
P + + T GP P S T GP P + S T GP P ++S T P P +P S+
Sbjct: 175 PQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQVLSRTARPAPGSQQDSRTPAPGSQQ 234
Query: 59 NTVEPHPYLRSNTVEPHPYLRSNTVGPHP 87
++ P P + ++ P P + ++ P P
Sbjct: 235 DSRTPTPGTQQDSRTPTPGTQQDSRTPAP 263
>gi|34932493|ref|XP_344708.1| similar to alpha 1 type XVII collagen; collagen XVII, alpha-1
polypeptide; bullous pemphigoid antigen 2 (180kD);
epidermolysis bullosa, junctional, localisata variant,
included [Rattus norvegicus]
Length = 223
Score = 43.5 bits (101), Expect = 0.001
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 10 PHPYLRSHTVGPXPISRSHTVGPHPYLMSHTVGPHPYLG--PTPTSPISRSNTVEPHPYL 67
P P+L+ + P P + + P P+L + P P+L P + ++P P+L
Sbjct: 35 PGPHLQGKAMDPGPHLQGKAMDPGPHLQGKAMDPGPHLQGKAMDPGPHLQGKAMDPGPHL 94
Query: 68 RSNTVEPHPYLRSNTVGPHP 87
+ ++P P+L+ + P P
Sbjct: 95 QGKAMDPGPHLQGKAMDPGP 114
Score = 43.5 bits (101), Expect = 0.001
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 10 PHPYLRSHTVGPXPISRSHTVGPHPYLMSHTVGPHPYLG--PTPTSPISRSNTVEPHPYL 67
P P+L+ + P P + + P P+L + P P+L P + ++P P+L
Sbjct: 24 PGPHLQGKAMDPGPHLQGKAMDPGPHLQGKAMDPGPHLQGKAMDPGPHLQGKAMDPGPHL 83
Query: 68 RSNTVEPHPYLRSNTVGPHP 87
+ ++P P+L+ + P P
Sbjct: 84 QGKAMDPGPHLQGKAMDPGP 103
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
Posted date: May 11, 2004 12:59 AM
Number of letters in database: 593,787,773
Number of sequences in database: 1,798,171
Lambda K H
0.314 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,717,091
Number of Sequences: 1798171
Number of extensions: 5899406
Number of successful extensions: 14896
Number of sequences better than 1.0e-03: 5
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14773
Number of HSP's gapped (non-prelim): 59
length of query: 87
length of database: 593,787,773
effective HSP length: 63
effective length of query: 24
effective length of database: 480,503,000
effective search space: 11532072000
effective search space used: 11532072000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 101 (43.5 bits)