BLASTP 2.2.5 [Nov-16-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ci0100147812
(141 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
1,798,171 sequences; 593,787,773 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13516889|dbj|BAB40596.1| Ci-META1 [Ciona intestinalis] 218 1e-56
gi|21703182|gb|AAM76088.1| mucin-like protein 1 [Boltenia v... 59 2e-08
gi|14331021|emb|CAC40991.1| Oikosin1 protein [Oikopleura di... 54 4e-07
gi|34877832|ref|XP_224741.2| similar to cartilage intermedi... 53 9e-07
gi|45946892|gb|AAH68256.1| Unknown (protein for IMAGE:52956... 52 2e-06
gi|38089660|ref|XP_146393.3| RIKEN cDNA 1110031K21 [Mus mus... 52 2e-06
gi|23510285|ref|NP_694953.1| cartilage intermediate layer p... 52 2e-06
gi|34864687|ref|XP_236348.2| similar to cartilage intermedi... 50 8e-06
gi|27734196|ref|NP_775561.1| cartilage intermediate layer p... 48 3e-05
gi|23272761|gb|AAH35776.1| Cartilage intermediate layer pro... 45 3e-04
gi|37182926|gb|AAQ89263.1| CILP [Homo sapiens] 45 3e-04
gi|4502845|ref|NP_003604.1| cartilage intermediate layer pr... 44 4e-04
gi|21703184|gb|AAM76089.1| mucin-like protein 2 [Boltenia v... 44 7e-04
>gi|13516889|dbj|BAB40596.1| Ci-META1 [Ciona intestinalis]
Length = 937
Score = 218 bits (556), Expect = 1e-56
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 26 VRPPTCRRGYQWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRV 85
VRPPTCRRGYQWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRV
Sbjct: 64 VRPPTCRRGYQWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRV 123
Query: 86 YGQVVNINTPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
YGQVVNINTPAEKGFSCFNAAQPNNQRCRNYKIRFCC
Sbjct: 124 YGQVVNINTPAEKGFSCFNAAQPNNQRCRNYKIRFCC 160
>gi|21703182|gb|AAM76088.1| mucin-like protein 1 [Boltenia villosa]
Length = 110
Score = 58.5 bits (140), Expect = 2e-08
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 29 PTCRRGYQWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQ 88
P CR G WTQ+++RD P+G D E + ++ + +C+N ++D T GL Y + G
Sbjct: 14 PFCR-GNMWTQWFDRDDPTGVGDWEILTEIR-KNACVCENPTAID-ARLTNGLRYSLGGD 70
Query: 89 VVNINTPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
++ ++ E G C N Q + RC +YK+RFCC
Sbjct: 71 IITLS--KEVGLICKNELQVDG-RCADYKVRFCC 101
>gi|14331021|emb|CAC40991.1| Oikosin1 protein [Oikopleura dioica]
Length = 2301
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 34 GYQWTQFYNRDRPSGHCDCENFSLLKAQYPE--ICDNRHSVDVVDATTGLDYRVYGQVVN 91
GY+WTQ+ +RD P G D E + YP+ +C++ ++ R G
Sbjct: 1622 GYEWTQWLDRDDPIGEGDYET----RFSYPQGSVCEDPTAIQA-------QARTAGSTSF 1670
Query: 92 INTPAEKGFSCFNAAQPNNQRCRNYKIRFCCRK 124
+ GF C N+ QPN +C ++++R+CC K
Sbjct: 1671 CHVDLAYGFWCDNSEQPNGAQCADFEVRYCCPK 1703
Score = 50.8 bits (120), Expect = 5e-06
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 30 TCR-RGYQWTQFYNRDRPSGHCDCENFSLLKAQYP-EICDNRHSVDVVDATTGLDYRVYG 87
TC +G++WT +YN D +G D E +LK P + C N V D G YG
Sbjct: 1093 TCNVKGWEWTSYYNIDTAAGTGDWE---ILKNLEPNQACLNPMGAKVRDTEAGY----YG 1145
Query: 88 QVVNINTPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
+ + +GF C N QP+ C +++I +CC
Sbjct: 1146 TSDAVTHLSLEGFYCLNEEQPSGMPCADFEISYCC 1180
Score = 48.1 bits (113), Expect = 3e-05
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 34 GYQWTQFYNRDRPSGHCDCENFSLLKAQYPE--ICDNRHSVDVVDATTGLDYRVYGQVVN 91
GY WT + +RD P D EN K +P +C + +V+ TG D G
Sbjct: 1713 GYGWTVWLDRDDPIESGDWEN----KDGFPAYIVCKDPLAVEAA-VVTGSD----GSTAV 1763
Query: 92 INTPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
+ ++GF C N QP ++ C ++++RFCC
Sbjct: 1764 THLDNDQGFWCINDEQPRDEVCADFEVRFCC 1794
Score = 47.4 bits (111), Expect = 5e-05
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 23 FFTVRPPTCR-RGYQWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGL 81
++TV C R W+ + N D P+G D E +L K ++C N TG+
Sbjct: 791 WYTVNEGECTDRTMSWSNWLNGDDPAGEGDYE--TLAKFNRMDVCGN---------PTGV 839
Query: 82 DYRVYGQVVN-INTPAEKGFSCFNAAQPNNQRCRNYKIRFCCRKY 125
R G + I+ E GF C N +N C +Y++RFCC ++
Sbjct: 840 QARTRGNDTDAIHLNLESGFWCVNDENTDNG-CNDYEVRFCCPRF 883
Score = 45.8 bits (107), Expect = 1e-04
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 31 CRRGYQWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDV--VDATTGLDYRVYGQ 88
C GY+W + N D P D E +L A + C N +V+ VD+
Sbjct: 604 CTDGYEWADWLNMDDPQNDGDWE--TLRMADMTQACINPKAVEAQRVDSADTTP-----M 656
Query: 89 VVNINTPAEKGFSCFNAAQPNNQRCRNYKIRFCCRKY 125
V +I+ E GF C N Q C +Y++RFCC KY
Sbjct: 657 VAHISR--ELGFWCINNEQAGGL-CVDYEVRFCCEKY 690
Score = 44.3 bits (103), Expect = 4e-04
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 33 RGYQWTQFYNRDRP-SGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQVVN 91
+GY+WT + N D P SG D E ++ ++C N ++ A G N
Sbjct: 1531 KGYEWTPWMNEDSPLSGTGDWE--TIQSQTELKVCSNPTAIQAFPAGA-------GATQN 1581
Query: 92 INTPAEKGFSCFNAAQPNNQRCRNYKIRFCCRKY 125
+ E GF C N + N+ C ++++R+CC Y
Sbjct: 1582 THIDVEIGFWCLN--EENSADCADFEVRWCCPTY 1613
>gi|34877832|ref|XP_224741.2| similar to cartilage intermediate layer protein-like protein 2
[Rattus norvegicus]
Length = 1505
Score = 53.1 bits (126), Expect = 9e-07
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQY--PEICDNRHSVDVVDATTGLDYRVYGQVVNIN 93
+WT ++N D P G D E+ + ++ Y +C +++ L + G+ V+ N
Sbjct: 401 EWTSWFNVDHPGGDGDFESLAAIRFYYGPARVCPRPLALEARTTDWALPAAI-GERVHAN 459
Query: 94 TPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E+GF C N QP +RC NY +RF C
Sbjct: 460 P--ERGFWCLNREQPRGRRCSNYHVRFRC 486
>gi|45946892|gb|AAH68256.1| Unknown (protein for IMAGE:5295699) [Homo sapiens]
Length = 392
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQY--PEICDNRHSVDVVDATTGLDYRVYGQVVNIN 93
+WT ++N D P G D E+ + ++ Y +C +++ L V G+ V++N
Sbjct: 58 EWTSWFNVDHPGGDGDFESLAAIRFYYGPARVCPRPLALEARTTDWALPSAV-GERVHLN 116
Query: 94 TPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
+GF C N QP +RC NY +RF C
Sbjct: 117 PT--RGFWCLNREQPRGRRCSNYHVRFRC 143
>gi|38089660|ref|XP_146393.3| RIKEN cDNA 1110031K21 [Mus musculus]
Length = 1162
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQY--PEICDNRHSVDVVDATTGLDYRVYGQVVNIN 93
+WT ++N D P G D E+ + ++ Y +C +++ L + G+ V+ N
Sbjct: 58 EWTSWFNVDHPGGDGDFESLAAIRFYYGPARVCPRPLALEARTTDWALPAAM-GERVHAN 116
Query: 94 TPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E+GF C N QP +RC NY +RF C
Sbjct: 117 P--ERGFWCLNREQPRGRRCSNYHVRFRC 143
>gi|23510285|ref|NP_694953.1| cartilage intermediate layer protein 2; cartilage intermediate
layer protein-like protein 2 [Homo sapiens]
gi|23307795|gb|AAN17826.1| cartilage intermediate layer protein-like protein CLIP-2 [Homo
sapiens]
Length = 1156
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQY--PEICDNRHSVDVVDATTGLDYRVYGQVVNIN 93
+WT ++N D P G D E+ + ++ Y +C +++ L V G+ V++N
Sbjct: 58 EWTSWFNVDHPGGDGDFESLAAIRFYYGPARVCPRPLALEARTTDWALPSAV-GERVHLN 116
Query: 94 TPAEKGFSCFNAAQPNNQRCRNYKIRFCC 122
+GF C N QP +RC NY +RF C
Sbjct: 117 PT--RGFWCLNREQPRGRRCSNYHVRFRC 143
>gi|34864687|ref|XP_236348.2| similar to cartilage intermediate layer protein, nucleotide
pyrophosphohydrolase [Rattus norvegicus]
Length = 1267
Score = 50.1 bits (118), Expect = 8e-06
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQVVNINTP 95
+WT ++N D P G D E ++ Y E R T + + GQVV+ +P
Sbjct: 55 EWTTWFNIDHPGGQGDYERLDAIRFYYGERVCARPLRLEARTTDWMPAGITGQVVH-GSP 113
Query: 96 AEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E GF C N Q Q C NY +RF C
Sbjct: 114 RE-GFWCLNKEQRPGQNCSNYTVRFLC 139
>gi|27734196|ref|NP_775561.1| cartilage intermediate layer protein, nucleotide
pyrophosphohydrolase [Mus musculus]
gi|26349225|dbj|BAC38252.1| unnamed protein product [Mus musculus]
Length = 1250
Score = 48.1 bits (113), Expect = 3e-05
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQVVNINTP 95
+WT ++N D P G D E ++ Y E R T + GQVV+ +P
Sbjct: 55 EWTTWFNIDHPGGQGDYERLDAIRFYYGERVCARPLRLEARTTDWMPAGSTGQVVH-GSP 113
Query: 96 AEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E GF C N Q Q C NY +RF C
Sbjct: 114 RE-GFWCLNREQRPGQNCSNYTVRFLC 139
>gi|23272761|gb|AAH35776.1| Cartilage intermediate layer protein [Homo sapiens]
Length = 1184
Score = 44.7 bits (104), Expect = 3e-04
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQVVNINTP 95
+WT ++N D P G D E ++ Y + R T GQVV+ +P
Sbjct: 55 EWTTWFNIDYPGGKGDYERLDAIRFYYGDRVCARPLRLEARTTDWTPAGSTGQVVH-GSP 113
Query: 96 AEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E GF C N Q Q C NY +RF C
Sbjct: 114 RE-GFWCLNREQRPGQNCSNYTVRFLC 139
>gi|37182926|gb|AAQ89263.1| CILP [Homo sapiens]
Length = 1184
Score = 44.7 bits (104), Expect = 3e-04
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQVVNINTP 95
+WT ++N D P G D E ++ Y + R T GQVV+ +P
Sbjct: 55 EWTTWFNIDYPGGKGDYERLDAIRFYYGDRVCARPLRLEARTTDWTPAGSTGQVVH-GSP 113
Query: 96 AEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E GF C N Q Q C NY +RF C
Sbjct: 114 RE-GFWCLNREQRPGQNCSNYTVRFLC 139
>gi|4502845|ref|NP_003604.1| cartilage intermediate layer protein [Homo sapiens]
gi|7512330|pir||T09484 cartilage intermediate layer protein precursor - human
gi|3513503|gb|AAC33838.1| cartilage intermediate layer protein [Homo sapiens]
gi|4587271|dbj|BAA76692.1| cartilage intermediate layer protein [Homo sapiens]
gi|6513587|gb|AAF14689.1| cartilage intermediate layer protein [Homo sapiens]
Length = 1184
Score = 44.3 bits (103), Expect = 4e-04
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 36 QWTQFYNRDRPSGHCDCENFSLLKAQYPEICDNRHSVDVVDATTGLDYRVYGQVVNINTP 95
+WT +N D P G D E ++ Y + R T GQVV+ +P
Sbjct: 55 EWTTLFNIDYPGGKGDYERLDAIRFYYGDRVCARPLRLEARTTDWTPAGSTGQVVH-GSP 113
Query: 96 AEKGFSCFNAAQPNNQRCRNYKIRFCC 122
E GF C N Q Q C NY +RF C
Sbjct: 114 RE-GFWCLNREQRPGQNCSNYTVRFLC 139
>gi|21703184|gb|AAM76089.1| mucin-like protein 2 [Boltenia villosa]
Length = 127
Score = 43.5 bits (101), Expect = 7e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 31 CRRGYQWTQFYNRDRPSGHCDCENFSLLKAQYPE--ICDNRHSVDVVDATTGLDYRVYGQ 88
C + WT +++ D PSG D E ++ +Y + +C + ++ TGL Y +
Sbjct: 35 CPKKCYWTNWFDVDNPSGTGDYETIHNIRKKYGDHKVCSHPSKIE-----TGLVRAGYYK 89
Query: 89 VVN--INTPAEKGFSCFNAAQP-NNQRCRNYKIRFCC 122
V ++ E G C N QP C++YK+RF C
Sbjct: 90 YVRNVLSVSKEVGLICKNNEQPYGKPPCQDYKVRFYC 126
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
Posted date: May 11, 2004 12:59 AM
Number of letters in database: 593,787,773
Number of sequences in database: 1,798,171
Lambda K H
0.326 0.139 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,449,866
Number of Sequences: 1798171
Number of extensions: 7158767
Number of successful extensions: 13763
Number of sequences better than 1.0e-03: 13
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13730
Number of HSP's gapped (non-prelim): 27
length of query: 141
length of database: 593,787,773
effective HSP length: 117
effective length of query: 24
effective length of database: 383,401,766
effective search space: 9201642384
effective search space used: 9201642384
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 100 (43.1 bits)