BLASTP 2.2.5 [Nov-16-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ci0100149327
(95 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
1,798,171 sequences; 593,787,773 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3510535|gb|AAC33527.1| collagen type IX alpha I chain, l... 60 7e-09
gi|20141212|sp|P20849|CA19_HUMAN Collagen alpha 1(IX) chain... 60 7e-09
gi|105675|pir||S13580 collagen alpha 1(IX) chain precursor,... 60 7e-09
gi|15929966|gb|AAH15409.1| COL9A1 protein [Homo sapiens] 60 7e-09
gi|11990228|emb|CAC19502.1| dJ149L1.1.1 (collagen type IX a... 60 7e-09
gi|30584377|gb|AAP36437.1| Homo sapiens collagen, type IX, ... 60 7e-09
gi|17978502|ref|NP_001842.2| alpha 1 type IX collagen isofo... 60 7e-09
gi|16506725|gb|AAL23918.1| type IX collagen alpha 1 chain [... 59 2e-08
gi|31982452|ref|NP_031766.2| procollagen, type IX, alpha 1 ... 54 9e-07
gi|5921191|sp|Q05722|CA19_MOUSE Collagen alpha 1(IX) chain ... 54 9e-07
gi|28422746|gb|AAH46970.1| Col9a1 protein [Mus musculus] 54 9e-07
gi|1085500|pir||S42617 collagen alpha 1(IX) chain - mouse >... 52 3e-06
gi|38077555|ref|XP_356824.1| similar to alpha 1 type XXII c... 48 4e-05
gi|34866787|ref|XP_243609.2| similar to alpha 1 type XXII c... 47 1e-04
gi|26404834|sp||P12106_1 [Segment 1 of 2] Collagen alpha 1(... 46 2e-04
gi|211574|gb|AAA48702.1| collagen proteoglycan precursor 46 2e-04
gi|627310|pir||B34493 collagen alpha 1(IX) chain long form ... 46 2e-04
gi|18201921|ref|NP_542376.1| alpha 1 type XII collagen shor... 44 5e-04
gi|32469237|dbj|BAC79012.1| type XII collagen NC1 domain lo... 44 5e-04
gi|20141279|sp|Q60847|CA1C_MOUSE Collagen alpha 1(XII) chai... 44 5e-04
gi|6680960|ref|NP_031756.1| procollagen, type XII, alpha 1 ... 44 5e-04
gi|346648|pir||C44479 collagen alpha 1(XII) chain - mouse (... 44 5e-04
gi|18201923|ref|NP_004361.2| alpha 1 type XII collagen long... 44 5e-04
gi|32469235|dbj|BAC79011.1| type XII collagen NC1 domain sh... 44 5e-04
gi|3182940|sp|Q99715|CA1C_HUMAN Collagen alpha 1(XII) chain... 44 5e-04
gi|346647|pir||D44479 collagen alpha 1(XII) chain - mouse (... 44 7e-04
gi|40805823|ref|NP_690848.1| collagen, type XXII, alpha 1 [... 44 9e-04
>gi|3510535|gb|AAC33527.1| collagen type IX alpha I chain, long form [Homo sapiens]
Length = 921
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|20141212|sp|P20849|CA19_HUMAN Collagen alpha 1(IX) chain precursor
Length = 921
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|105675|pir||S13580 collagen alpha 1(IX) chain precursor, long splice form - human
gi|30084|emb|CAA38276.1| unnamed protein product [Homo sapiens]
Length = 931
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|15929966|gb|AAH15409.1| COL9A1 protein [Homo sapiens]
Length = 328
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|11990228|emb|CAC19502.1| dJ149L1.1.1 (collagen type IX alpha 1) [Homo sapiens]
Length = 678
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|30584377|gb|AAP36437.1| Homo sapiens collagen, type IX, alpha 1 [synthetic construct]
Length = 329
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|17978502|ref|NP_001842.2| alpha 1 type IX collagen isoform 1 precursor; collagen IX, alpha-1
polypeptide; cartilage-specific short collagen [Homo
sapiens]
Length = 921
Score = 60.5 bits (145), Expect = 7e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R+L P+GLP E+S + FRM G T+K W++ + DS+ + NG +S+ S
Sbjct: 100 RNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S ++SLFD +HK+ + VE++
Sbjct: 160 LDG--SLQTAAFSN--LSSLFDSQWHKIMIGVERS 190
>gi|16506725|gb|AAL23918.1| type IX collagen alpha 1 chain [Bos taurus]
Length = 187
Score = 59.3 bits (142), Expect = 2e-08
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R L PNGLP E+S + FRM G T++ WS+ + DS+ + NG +S+ S
Sbjct: 72 RHLYPNGLPEEYSFLTTFRMTGSTLEKHWSIWQIQDSSGKEQVGVKINGQTKSVSFSYKG 131
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQN 95
LQT A S + SLFD +HK+ + VE++
Sbjct: 132 LDG--SLQTAAFSN--LPSLFDSQWHKIMIGVERS 162
>gi|31982452|ref|NP_031766.2| procollagen, type IX, alpha 1 [Mus musculus]
gi|26326989|dbj|BAC27238.1| unnamed protein product [Mus musculus]
Length = 921
Score = 53.5 bits (127), Expect = 9e-07
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R L P+GLP E+S + FRM G T++ W++ + DS + NG +S+ S
Sbjct: 100 RHLYPSGLPEEYSFLTTFRMTGSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQ 94
LQT A + SLFD +HKL + VE+
Sbjct: 160 LDG--SLQTAAFLN--LPSLFDSRWHKLMIGVER 189
>gi|5921191|sp|Q05722|CA19_MOUSE Collagen alpha 1(IX) chain precursor
gi|543202|pir||S40495 collagen alpha 1(IX) chain, long form - mouse
gi|987667|dbj|BAA04463.1| alpha 1 type IX collagen chain [Mus musculus]
Length = 921
Score = 53.5 bits (127), Expect = 9e-07
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R L P+GLP E+S + FRM G T++ W++ + DS + NG +S+ S
Sbjct: 100 RHLYPSGLPEEYSFLTTFRMTGSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQ 94
LQT A + SLFD +HKL + VE+
Sbjct: 160 LDG--SLQTAAFLN--LPSLFDSRWHKLMIGVER 189
>gi|28422746|gb|AAH46970.1| Col9a1 protein [Mus musculus]
Length = 629
Score = 53.5 bits (127), Expect = 9e-07
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R L P+GLP E+S + FRM G T++ W++ + DS + NG +S+ S
Sbjct: 100 RHLYPSGLPEEYSFLTTFRMTGSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQ 94
LQT A + SLFD +HKL + VE+
Sbjct: 160 LDG--SLQTAAFLN--LPSLFDSRWHKLMIGVER 189
>gi|1085500|pir||S42617 collagen alpha 1(IX) chain - mouse
gi|192676|gb|AAA21834.1| alpha-1 type IX collagen
gi|744962|prf||2015346A collagen:SUBUNIT=alpha1:ISOTYPE=IX
Length = 921
Score = 51.6 bits (122), Expect = 3e-06
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R L P+GLP +S + FRM G T++ W++ + DS + NG +S+ S
Sbjct: 100 RHLYPSGLPERYSFLTTFRMTGSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKG 159
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVEQ 94
LQT A + SLFD +HKL + VE+
Sbjct: 160 LDG--SLQTAAFLN--LPSLFDSRWHKLMIGVER 189
>gi|38077555|ref|XP_356824.1| similar to alpha 1 type XXII collagen [Mus musculus]
Length = 714
Score = 48.1 bits (113), Expect = 4e-05
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 RSLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYS 60
R + P GLP E++ + FR + K+ W + V D S+ +G N++ V +
Sbjct: 361 RDVFPQGLPDEYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKA--VEYNA 418
Query: 61 FASRTRLQTVALSGPLVASLFDRSFHKLELLVE 93
+ V GP V LFDR +HK+ L ++
Sbjct: 419 VGAMKDAVRVVFRGPRVDDLFDRDWHKMALSIQ 451
>gi|34866787|ref|XP_243609.2| similar to alpha 1 type XXII collagen [Rattus norvegicus]
Length = 821
Score = 46.6 bits (109), Expect = 1e-04
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
+ P GLP E++ + FR + K+ W + V D S+ +G N++ V +
Sbjct: 284 VFPQGLPDEYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKA--VEYNAVG 341
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLVE 93
+ V GP V +LFDR +HK+ L ++
Sbjct: 342 AMEDAVRVVFRGPQVDNLFDRDWHKMALSIQ 372
>gi|26404834|sp||P12106_1 [Segment 1 of 2] Collagen alpha 1(IX) chain precursor
gi|211624|gb|AAA48708.1| alpha(IX) collagen-proteoglycan
Length = 416
Score = 45.8 bits (107), Expect = 2e-04
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 2 SLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSF 61
++ NGLP E+S + FRM G T++ W++ + DS+ ++ NG +S+ S
Sbjct: 101 AIYSNGLPDEYSFLTTFRMTGATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGV 160
Query: 62 ASRTRLQTVALSGPLVASLFDRSFHKLELLVE 93
LQT + + LFD +HKL + VE
Sbjct: 161 DG--SLQTASFLH--LPFLFDSQWHKLMISVE 188
>gi|211574|gb|AAA48702.1| collagen proteoglycan precursor
Length = 299
Score = 45.8 bits (107), Expect = 2e-04
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 2 SLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSF 61
++ NGLP E+S + FRM G T++ W++ + DS+ ++ NG +S+ S
Sbjct: 101 AIYSNGLPDEYSFLTTFRMTGATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGV 160
Query: 62 ASRTRLQTVALSGPLVASLFDRSFHKLELLVE 93
LQT + + LFD +HKL + VE
Sbjct: 161 DG--SLQTASFLH--LPFLFDSQWHKLMISVE 188
>gi|627310|pir||B34493 collagen alpha 1(IX) chain long form precursor - chicken
Length = 920
Score = 45.8 bits (107), Expect = 2e-04
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 2 SLLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSF 61
++ NGLP E+S + FRM G T++ W++ + DS+ ++ NG +S+ S
Sbjct: 101 AIYSNGLPDEYSFLTTFRMTGATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGV 160
Query: 62 ASRTRLQTVALSGPLVASLFDRSFHKLELLVE 93
LQT + + LFD +HKL + VE
Sbjct: 161 DG--SLQTASFLH--LPFLFDSQWHKLMISVE 188
>gi|18201921|ref|NP_542376.1| alpha 1 type XII collagen short isoform precursor [Homo sapiens]
Length = 1899
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 1404 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTL--SFFNKD 1461
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 1462 TRGEVQTVTFDTEEVKTLFYGSFHKVHIVV 1491
>gi|32469237|dbj|BAC79012.1| type XII collagen NC1 domain long type splicing isoform [Bos
taurus]
Length = 725
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 180 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTL--SFFNKD 237
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 238 TRGEVQTVTFDTDEVKALFYGSFHKVHIVV 267
>gi|20141279|sp|Q60847|CA1C_MOUSE Collagen alpha 1(XII) chain precursor
Length = 3119
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 2573 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYRPQVGVIADPSSKTL--SFFNKD 2630
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 2631 TRGEVQTVTFDTDEVKTLFYGSFHKVHIVV 2660
>gi|6680960|ref|NP_031756.1| procollagen, type XII, alpha 1 [Mus musculus]
gi|953237|gb|AAA99719.1| collagen type XII alpha-1 precursor
Length = 3067
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 2573 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYRPQVGVIADPSSKTL--SFFNKD 2630
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 2631 TRGEVQTVTFDTDEVKTLFYGSFHKVHIVV 2660
>gi|346648|pir||C44479 collagen alpha 1(XII) chain - mouse (fragment)
gi|258836|gb|AAB23939.1| alpha 1 (XII) collagen=extracellular matrix protein {triple-helical
domains COL1 and COL2} [mice, embryos, Peptide Partial,
516 aa]
Length = 516
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 43 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYRPQVGVIADPSSKTL--SFFNKD 100
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 101 TRGEVQTVTFDTDEVKTLFYGSFHKVHIVV 130
>gi|18201923|ref|NP_004361.2| alpha 1 type XII collagen long isoform precursor [Homo sapiens]
Length = 3063
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 2568 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTL--SFFNKD 2625
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 2626 TRGEVQTVTFDTEEVKTLFYGSFHKVHIVV 2655
>gi|32469235|dbj|BAC79011.1| type XII collagen NC1 domain short type splicing isoform [Bos
taurus]
Length = 682
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 187 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTL--SFFNKD 244
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 245 TRGEVQTVTFDTDEVKALFYGSFHKVHIVV 274
>gi|3182940|sp|Q99715|CA1C_HUMAN Collagen alpha 1(XII) chain precursor
gi|1846005|gb|AAC51244.1| collagen type XII alpha-1 [Homo sapiens]
Length = 3063
Score = 44.3 bits (103), Expect = 5e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 2568 LHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTL--SFFNKD 2625
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 2626 TRGEVQTVTFDTEEVKTLFYGSFHKVHIVV 2655
>gi|346647|pir||D44479 collagen alpha 1(XII) chain - mouse (fragment)
gi|258837|gb|AAB23940.1| alpha 1 (XII) collagen=extracellular matrix protein
{non-triple-helical doamin NC3, triple-helical domain
COL2} [mice, embryos, Peptide Partial, 275 aa]
Length = 275
Score = 43.9 bits (102), Expect = 7e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
L PNGLP +++I +FR+ T D +++ + D + + + +++L S ++
Sbjct: 2 LHPNGLPPSYTIILLFRILPETPSDPFAIWQITDRDYRPQVGVIADPSSKTL--SFFNKD 59
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLV 92
+R +QTV V +LF SFHK+ ++V
Sbjct: 60 TRGEVQTVTFDTDEVKTLFYGSFHKVHIVV 89
>gi|40805823|ref|NP_690848.1| collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 43.5 bits (101), Expect = 9e-04
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 3 LLPNGLPLEFSLIAIFRMHGRTIKDTWSLLHVADSTHNIMFSLSFNGINRSLFVSRYSFA 62
+ P GLP E++ + FR + K+ W + V D S+ +G N++ V +
Sbjct: 284 VFPQGLPDEYAFVTTFRFRKTSRKEDWYIWQVIDQYSIPQVSIRLDGENKA--VEYNAVG 341
Query: 63 SRTRLQTVALSGPLVASLFDRSFHKLELLVE 93
+ V G V LFDR +HK+ L ++
Sbjct: 342 AMKDAVRVVFRGSRVNDLFDRDWHKMALSIQ 372
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
Posted date: May 11, 2004 12:59 AM
Number of letters in database: 593,787,773
Number of sequences in database: 1,798,171
Lambda K H
0.326 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,748,117
Number of Sequences: 1798171
Number of extensions: 2851152
Number of successful extensions: 8599
Number of sequences better than 1.0e-03: 27
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8561
Number of HSP's gapped (non-prelim): 27
length of query: 95
length of database: 593,787,773
effective HSP length: 71
effective length of query: 24
effective length of database: 466,117,632
effective search space: 11186823168
effective search space used: 11186823168
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 101 (43.5 bits)